- let out_file = "output.bmp"
- arr <- read_word16s in_file
- let arr' = swap_bytes arr
- let arrInv = flip_x $ flip_y arr'
- let arrSlice = z_slice 50 arrInv
- let arrSlice' = R.reshape mri_slice3d arrSlice
- let dbl_data = R.map fromIntegral arrSlice'
- let g = make_grid 1 dbl_data
- let output = zoom g zoom_factor
- write_values_slice_to_bitmap (z_slice 0 output) out_file
+ arr <- read_word16s input shape
+ arrSlice <- R.computeUnboxedP
+ $ z_slice (fromJust slice)
+ $ flip_x width
+ $ flip_y height
+ $ swap_bytes arr
+ let arrSlice' = R.reshape slice3d arrSlice
+
+ -- If zoom isn't being inlined we need to extract the slice before hand,
+ -- and convert it to the require formed.
+ dbl_data <- R.computeUnboxedP $ R.map fromIntegral arrSlice'
+ raw_output <- zoom dbl_data zoom_factor
+ arrSlice0 <- R.computeUnboxedP $ z_slice 0 raw_output
+
+ -- Make doubles from the thresholds which are given as Ints.
+ let lt = fromIntegral lower_threshold
+ let ut = fromIntegral upper_threshold
+
+ let arr_bracketed = bracket_array lt ut arrSlice0
+ values <- R.computeUnboxedP $ R.map fromIntegral arr_bracketed
+ write_values_to_bmp output values
+
+ where
+ slice3d :: R.DIM3
+ slice3d = (R.Z R.:. 1 R.:. height R.:. width)