read_word16s :: FilePath -> IO RawData3D
read_word16s path = do
arr <- R.readArrayFromStorableFile path mri_shape
- now $ R.copyS arr
+ c <- R.copyP arr
+ now $ c
{-# INLINE swap_bytes #-}
-swap_bytes :: (Shape sh, Repr r Word16) => Array r sh Word16
+swap_bytes :: (Shape sh, Source r Word16) => Array r sh Word16
-> Array D sh Word16
swap_bytes =
R.map flip16
R.map round
-flip_y :: Repr r Word16 => Array r DIM3 Word16 -> Array D DIM3 Word16
+flip_y :: Source r Word16 => Array r DIM3 Word16 -> Array D DIM3 Word16
flip_y arr =
R.unsafeTraverse arr id
(\get (Z :. z :. y :. x) ->
get (Z :. z :. (mri_height - 1) - y :. x))
-flip_x :: Repr r Word16 => Array r DIM3 Word16 -> Array D DIM3 Word16
+flip_x :: Source r Word16 => Array r DIM3 Word16 -> Array D DIM3 Word16
flip_x arr =
R.unsafeTraverse arr id
(\get (Z :. z :. y :. x) ->
-values_to_colors :: (Shape sh) => (Values sh) -> (ColorData sh)
+--
+-- Instead of IO, we could get away with a generic monad 'm'
+-- here. However, /we/ only call this function from within IO.
+--
+values_to_colors :: (Shape sh) => (Values sh) -> IO (ColorData sh)
values_to_colors arr =
- R.computeS $ R.map (truncate_rgb . ramp_it) arr
+ R.computeUnboxedP $ R.map (truncate_rgb . ramp_it) arr
where
ramp_it :: Double -> (Double, Double, Double)
ramp_it x =
b' = truncate (b * 255)
-z_slice :: (R.Unbox a, Repr r a) => Int -> Array r DIM3 a -> Array D DIM2 a
+z_slice :: (R.Unbox a, Source r a) => Int -> Array r DIM3 a -> Array D DIM2 a
z_slice n arr =
slice arr (Any :. n :. All :. All)
write_values_slice_to_bitmap :: Values2D -> FilePath -> IO ()
-write_values_slice_to_bitmap v3d path =
+write_values_slice_to_bitmap v3d path = do
+ values <- R.computeUnboxedP $ R.map fromIntegral arr_bracketed
+ colors <- values_to_colors $ values
R.writeImageToBMP path colors
where
arr_bracketed = bracket_array v3d
- colors = values_to_colors $ R.computeS $ R.map fromIntegral arr_bracketed