module Main where import qualified Data.Array.Repa as R import qualified Data.Array.Repa.IO.BMP as R (writeComponentsToBMP) import System.Environment (getArgs) import Grid (make_grid, zoom) import MRI import Values (drop_z, zoom_shape) main :: IO () main = do (s:_) <- getArgs let scale = read s :: Int let zoom_factor = (1, scale, scale) let out_file = "output.bmp" arr <- read_word16s in_file let arr' = swap_bytes arr let arrInv = flip_x $ flip_y arr' let arrSlice = z_slice3 50 arrInv let dbl_data = R.map fromIntegral arrSlice let g = make_grid 1 dbl_data let output = zoom g zoom_factor let arrBrack = bracket_array output print $ "arrBrack extent:" ++ (show $ R.extent arrBrack) let arrBrack' = z_slice 1 arrBrack print $ "arrBrack' extent:" ++ (show $ R.extent arrBrack') let mri_slice2d = drop_z $ zoom_shape zoom_factor mri_slice3d let colors = values_to_colors $ R.reshape mri_slice2d $ R.map fromIntegral arrBrack' let routput = R.map (\(red, _, _) -> red) colors let goutput = R.map (\(_, green, _) -> green) colors let boutput = R.map (\(_, _, blue) -> blue) colors R.writeComponentsToBMP out_file routput goutput boutput in_file :: FilePath in_file = "./data/mri.bin" main3d :: IO () main3d = do (s:_) <- getArgs let scale = read s :: Int let zoom_factor = (scale, scale, scale) let out_file = "output.bin" arr <- read_word16s in_file let arr' = swap_bytes arr -- let arrInv = flip_x $ flip_y arr' let arrMRI = R.reshape mri_shape arr' let dbl_data = R.force $ R.map fromIntegral arrMRI let g = make_grid 1 dbl_data let output = zoom g zoom_factor let word16_output = bracket_array output write_word16s out_file word16_output main2d :: IO () main2d = do (s:_) <- getArgs let scale = read s :: Int let zoom_factor = (1, scale, scale) let out_file = "output.bmp" arr <- read_word16s in_file let arr' = swap_bytes arr let arrInv = flip_x $ flip_y arr' let arrSlice = z_slice 50 arrInv let arrSlice' = R.reshape mri_slice3d arrSlice let dbl_data = R.map fromIntegral arrSlice' let g = make_grid 1 dbl_data let output = zoom g zoom_factor let arrBrack = bracket_array output let mri_slice2d = drop_z $ zoom_shape zoom_factor mri_slice3d let colors = values_to_colors $ R.reshape mri_slice2d $ R.map fromIntegral arrBrack let routput = R.map (\(red, _, _) -> red) colors let goutput = R.map (\(_, green, _) -> green) colors let boutput = R.map (\(_, _, blue) -> blue) colors R.writeComponentsToBMP out_file routput goutput boutput