X-Git-Url: http://gitweb.michael.orlitzky.com/?a=blobdiff_plain;f=src%2FMain.hs;h=cfd17247b27de3c146096fd04acf503d1fecb329;hb=34bd61af15ba657cdbca796ed14c1798907f8635;hp=c4204c821f4f534f1df7c72784b155dbd7072f83;hpb=8b5168ee28e4fd1d5958eabeb00fa6ee06bbfe3b;p=spline3.git

diff --git a/src/Main.hs b/src/Main.hs
index c4204c8..cfd1724 100644
--- a/src/Main.hs
+++ b/src/Main.hs
@@ -1,27 +1,59 @@
 module Main
 where
 
---import Cube
---import Face
---import Grid
---import Misc (flatten)
---import Point
---import RealFunction
---import Tetrahedron
---import ThreeDimensional
-
-
-
---find_point_value :: RealFunction Point
---find_point_value p = poly p
---    where
---      g0 = make_grid 1 trilinear
---      the_cubes = flatten (cubes g0)
---      good_cubes = filter ((flip contains_point) p) the_cubes
---       target_cube = head good_cubes
---       good_tets = filter ((flip contains_point) p) (tetrahedrons target_cube)
---       target_tetrahedron = head good_tets
---       poly = polynomial target_tetrahedron
+import qualified Data.Array.Repa as R
+import System.Environment (getArgs)
+
+import Grid (zoom)
+import MRI (
+  flip_x,
+  flip_y,
+  mri_shape,
+  mri_slice3d,
+  read_word16s,
+  round_array,
+  swap_bytes,
+  write_values_slice_to_bitmap,
+  write_word16s,
+  z_slice
+  )
+
+in_file :: FilePath
+in_file = "./data/mri.bin"
+
 
 main :: IO ()
-main = putStrLn "Hello, World."
+main = main3d
+
+main3d :: IO ()
+main3d = do
+  (s:_) <- getArgs
+  let scale = read s :: Int
+  let zoom_factor = (scale, scale, scale)
+  let out_file = "output.bin"
+  arr <- read_word16s in_file
+  let arr'          = swap_bytes arr
+  let arrMRI        = R.reshape mri_shape arr'
+  let dbl_data      = R.compute $ R.map fromIntegral arrMRI
+  let output        = zoom dbl_data zoom_factor
+  let word16_output = R.compute $ round_array output
+  write_word16s out_file word16_output
+
+
+main2d :: IO ()
+main2d = do
+  (s:_) <- getArgs
+  let scale = read s :: Int
+  let zoom_factor = (1, scale, scale)
+  let out_file = "output.bmp"
+  arr           <- read_word16s in_file
+  let arrSlice  = R.computeUnboxed $ z_slice 50 $ flip_x $ flip_y $ swap_bytes arr
+  let arrSlice' = R.reshape mri_slice3d arrSlice
+
+  -- If zoom isn't being inlined we need to extract the slice before hand,
+  -- and convert it to the require formed.
+  let dbl_data  = R.compute $ R.map fromIntegral arrSlice'
+  let output    = zoom dbl_data zoom_factor
+  let arrSlice0 = R.computeUnboxed $ z_slice 0 output
+  
+  write_values_slice_to_bitmap arrSlice0 out_file