X-Git-Url: http://gitweb.michael.orlitzky.com/?a=blobdiff_plain;f=src%2FMRI.hs;h=5cca1aed9ffcd2ab9250cd5883326fd45a59f087;hb=1ea61681483c8402faf572c8c853ba086b622ffe;hp=094991c2dac537b38e18bd992b7dfe90737ea726;hpb=3544d15ebbd0176c9aac2fd0e0e94468abc56879;p=spline3.git

diff --git a/src/MRI.hs b/src/MRI.hs
index 094991c..5cca1ae 100644
--- a/src/MRI.hs
+++ b/src/MRI.hs
@@ -66,7 +66,8 @@ type ColorData sh = Array U sh RGB
 read_word16s :: FilePath -> IO RawData3D
 read_word16s path = do
   arr <- R.readArrayFromStorableFile path mri_shape
-  now $ R.copyS arr
+  c   <- R.copyP arr
+  now $ c
 
 
 
@@ -87,7 +88,7 @@ flip16 xx =
 
 
 {-# INLINE swap_bytes #-}
-swap_bytes :: (Shape sh, Repr r Word16) => Array r sh Word16
+swap_bytes :: (Shape sh, Source r Word16) => Array r sh Word16
              -> Array D sh Word16
 swap_bytes =
   R.map flip16
@@ -104,13 +105,13 @@ round_array =
   R.map round
 
 
-flip_y :: Repr r Word16 => Array r DIM3 Word16 -> Array D DIM3 Word16
+flip_y :: Source r Word16 => Array r DIM3 Word16 -> Array D DIM3 Word16
 flip_y arr =
   R.unsafeTraverse arr id
               (\get (Z :. z :. y :. x) ->
                    get (Z :. z :. (mri_height - 1) - y :. x))
 
-flip_x :: Repr r Word16 => Array r DIM3 Word16 -> Array D DIM3 Word16
+flip_x :: Source r Word16 => Array r DIM3 Word16 -> Array D DIM3 Word16
 flip_x arr =
   R.unsafeTraverse arr id
               (\get (Z :. z :. y :. x) ->
@@ -123,9 +124,13 @@ write_word16s = R.writeArrayToStorableFile
 
 
 
-values_to_colors :: (Shape sh) => (Values sh) -> (ColorData sh)
+--
+-- Instead of IO, we could get away with a generic monad 'm'
+-- here. However, /we/ only call this function from within IO.
+--
+values_to_colors :: (Shape sh) => (Values sh) -> IO (ColorData sh)
 values_to_colors arr =
-  R.computeS $ R.map (truncate_rgb . ramp_it) arr
+  R.computeUnboxedP $ R.map (truncate_rgb . ramp_it) arr
   where
     ramp_it :: Double -> (Double, Double, Double)
     ramp_it x =
@@ -143,14 +148,15 @@ values_to_colors arr =
         b' = truncate (b * 255)
 
 
-z_slice :: (R.Unbox a, Repr r a) => Int -> Array r DIM3 a -> Array D DIM2 a
+z_slice :: (R.Unbox a, Source r a) => Int -> Array r DIM3 a -> Array D DIM2 a
 z_slice n arr =
   slice arr (Any :. n :. All :. All)
 
 
 write_values_slice_to_bitmap :: Values2D -> FilePath -> IO ()
-write_values_slice_to_bitmap v3d path =
+write_values_slice_to_bitmap v3d path = do
+  values <- R.computeUnboxedP $ R.map fromIntegral arr_bracketed
+  colors <- values_to_colors $ values
   R.writeImageToBMP path colors
   where
     arr_bracketed = bracket_array v3d
-    colors = values_to_colors $ R.computeS $ R.map fromIntegral arr_bracketed